Basic Information
Locus ID:
gene.Thate08g03670
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 53923178 | 53926451 | - | gene.Thate08g03670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 56,299.31 Da | 35.62 | 83.97 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 232 | 266 | 0.0023 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 198 | 218 | 1.4E-4 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 426 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 387 | 0.0039 | IPR001680 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 9 | 28 | 0.015 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 3 | 28 | 2.88E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 228 | 515 | 1.37E-42 | IPR036322 |
| Gene3D | G3DSA:4.10.1000.10 | - | 1 | 78 | 7.8E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 208 | 281 | 2.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 516 | 3.2E-30 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 194 | 220 | 0.018 | IPR000571 |
| SMART | SM00320 | WD40_4 | 350 | 387 | 2.2E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 4 | 29 | 6.8E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 227 | 266 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 427 | 5.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 343 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 514 | 170.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 234 | 266 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 357 | 390 | 9.335602 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 3 | 30 | 14.013797 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 234 | 275 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 396 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 193 | 221 | 12.2017 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 253 | 267 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 414 | 428 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 374 | 388 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 160 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010933903.1 | zinc finger CCCH domain-containing protein 17 [Elaeis guineensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9RX45 | zinc finger CCCH domain-containing protein 17 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105054155 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology