Basic Information
Locus ID:
gene.Thate08g01980
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 20814152 | 20818052 | - | gene.Thate08g01980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 71,019.67 Da | 40.54 | 96.24 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 307 | 7.34297E-27 | - |
| Pfam | PF04564 | U-box domain | 261 | 331 | 5.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 430 | 468 | 2.1E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 388 | 427 | 2.7E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 471 | 509 | 1.2E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 349 | 632 | 5.38E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 336 | 6.06E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 352 | 630 | 4.2E-53 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 334 | 6.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 2.8E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 552 | 592 | 32.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 388 | 428 | 3.5E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 347 | 386 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 511 | 551 | 330.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 429 | 469 | 0.014 | IPR000225 |
| SMART | SM00185 | arm_5 | 470 | 510 | 3.5E-4 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 44.67255 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 399 | 441 | 13.0724 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_008789544.1 | U-box domain-containing protein 12 isoform X1 [Phoenix dactylifera] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C1E5 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103707003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology