Basic Information
Locus ID:
gene.Thate08g01740
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 17554914 | 17635101 | + | gene.Thate08g01740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 67,460.93 Da | 77.19 | 60.91 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 549 | 589 | 3.38464E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 547 | 594 | 1.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 549 | 595 | 1.27E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 538 | 602 | 1.4E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 550 | 589 | 10.615647 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 115 | - | - |
| Coils | Coil | Coil | 480 | 500 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020247759.1 | uncharacterized protein LOC109825328 [Asparagus officinalis] | 0 |
| TrEMBL | A0A6J0PH95 | uncharacterized protein LOC105042919 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology