Basic Information
Locus ID:
gene.Thate08g00910
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 8408582 | 8437844 | - | gene.Thate08g00910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 95,469.37 Da | 46.78 | 81.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 101 | 344 | 6.93535E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 137 | 0.0052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 263 | 1.4E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 305 | 6.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 179 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 221 | 1.5E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 710 | 867 | 1.1E-48 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 349 | 3.4E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 388 | 2.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 291 | 3.5E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 140 | 179 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 137 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 348 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 8.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 305 | 6.9E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 146 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 189 | 223 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 138 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 230 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 314 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 181 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 231 | 272 | 18.094381 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 188 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 231 | 268 | 14.001942 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 308 | 12.499222 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 292 | 306 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 250 | 264 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 8.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 250 | 264 | 8.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 208 | 222 | 8.7E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 93 | 870 | 20.425047 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 626 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935617.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N6X2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cocos nucifera OX=13894 GN=COCNU_09G006950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology