Basic Information
Locus ID:
gene.Thate08g00610
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 6144695 | 6153717 | + | gene.Thate08g00610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 168,521.23 Da | 39.19 | 105.44 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 636 | 836 | 1.1881E-103 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1268 | 1488 | 2.65409E-124 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 323 | 610 | 3.52348E-107 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 951 | 1245 | 1.48436E-96 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 323 | 590 | 4.8E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 954 | 1193 | 3.8E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1287 | 1435 | 2.0E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 654 | 788 | 2.6E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 950 | 1250 | 6.54E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1260 | 1501 | 6.04E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 858 | 2.11E-53 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 313 | 620 | 5.49E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 871 | 2.6E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 912 | 1250 | 1.4E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 298 | 617 | 1.0E-56 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1505 | 5.3E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1296 | 1481 | 1.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 663 | 836 | 8.7E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1270 | 1504 | 17.293718 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 953 | 1223 | 34.871677 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 636 | 859 | 22.695852 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 326 | 602 | 38.431099 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 761 | 775 | - | IPR017871 |
| Coils | Coil | Coil | 513 | 533 | - | - |
| Coils | Coil | Coil | 909 | 929 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010936069.1 | ABC transporter C family member 5 isoform X1 [Elaeis guineensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9S146 | ABC transporter C family member 5 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105055780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology