Basic Information
Locus ID:
gene.Thate07g20340
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 421278440 | 421301806 | + | gene.Thate07g20340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 72,995.73 Da | 50.00 | 66.59 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 51 | 81 | 2.99941E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 381 | 494 | 3.02287E-51 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 186 | 356 | 3.2E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 50 | 80 | 8.5E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 393 | 501 | 3.8E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 45 | 84 | 7.47E-9 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 234 | 517 | 4.59E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 372 | 543 | 5.1E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 136 | 371 | 8.8E-85 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 45 | 87 | 1.2E-5 | - |
| SMART | SM00456 | ww_5 | 49 | 82 | 5.7E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 181 | 384 | 4.9E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 421 | 501 | 2.2E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 162 | 190 | 10.576978 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 48 | 82 | 11.211101 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 193 | 367 | 30.521877 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 396 | 540 | 25.36248 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 54 | 80 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 313 | 321 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 645 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_007217002.1 | DEAD-box ATP-dependent RNA helicase 46 [Prunus persica] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9HWX9 | ATP-dependent RNA helicase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05473 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology