Basic Information
Locus ID:
gene.Thate07g17950
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 390542067 | 390588955 | + | gene.Thate07g17950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 91,550.10 Da | 46.85 | 79.82 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 548 | 829 | 6.06094E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 640 | 673 | 5.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 725 | 757 | 0.019 | IPR001680 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 224 | 266 | 3.5E-5 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 323 | 1.52E-17 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 550 | 799 | 3.81E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 526 | 819 | 6.3E-99 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 85 | 320 | 4.3E-23 | - |
| SMART | SM00320 | WD40_4 | 676 | 715 | 0.0094 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 580 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 630 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 673 | 5.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 719 | 757 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 766 | 807 | 300.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 311 | 9.82809 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 640 | 682 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 726 | 761 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 726 | 766 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 640 | 675 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 744 | 758 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 617 | 631 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 660 | 674 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 744 | 758 | 5.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010260211.1 | PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843VKW4 | Protein kinase domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_025571 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology