Basic Information
Locus ID:
gene.Thate07g16850
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 369016970 | 369022950 | + | gene.Thate07g16850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 73,900.12 Da | 49.10 | 76.50 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 53 | 168 | 1.57174E-29 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 87 | 154 | 1.2E-7 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 14 | 358 | 7.9E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 424 | 494 | 3.9E-7 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 361 | 418 | 4.0E-11 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 209 | 358 | 1.1E-63 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 360 | 487 | 1.08E-37 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 11 | 206 | 2.74E-51 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 360 | 476 | 1.9E-27 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 14 | 356 | 2.3E-156 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 46 | 202 | 2.3E-156 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 2 | 603 | 8.1E-225 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_019052368.1 | PREDICTED: LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Nelumbo nucifera] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8Q0M0 | polynucleotide adenylyltransferase OS=Nelumbo nucifera OX=4432 GN=LOC104592040 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology