Basic Information
Locus ID:
gene.Thate07g15880
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 343764852 | 343768940 | + | gene.Thate07g15880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 25,369.92 Da | 46.25 | 89.20 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 159 | 1.1E-22 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 62 | 173 | 2.96E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 52 | 178 | 2.1E-37 | IPR027417 |
| SMART | SM00487 | ultradead3 | 5 | 188 | 9.2E-7 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 171 | 17.230314 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_029124388.1 | ATP-dependent RNA helicase-like protein DB10 isoform X2 [Elaeis guineensis] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8N4F4I7 | ATP-dependent RNA helicase-like protein DB10 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058818 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology