halophFGD

Basic Information

Locus ID: gene.Thate07g14100

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: Belongs to the precorrin methyltransferase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr07	278317634	278325200	+	gene.Thate07g14100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.98	7,389.64 Da	20.65	98.95	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases	17	61	3.5E-10	IPR000878
SUPERFAMILY	SSF53790	Tetrapyrrole methylase	17	61	6.02E-13	IPR035996

Gene Ontology

Molecular Function:

GO:0008168 (methyltransferase activity)

KEGG Pathway

KO Term:

K02303 (uroporphyrin-III C-methyltransferase [EC:2.1.1.107])

Pathway:

ko00860 (Porphyrin metabolism) map00860 (Porphyrin metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments)

Module:

M00121 (Heme biosynthesis, plants and bacteria, glutamate => heme)

Reaction:

R03194 (2 S-Adenosyl-L-methionine + Uroporphyrinogen III <=> 2 S-Adenosyl-L-homocysteine + Precorrin 2)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40850.2	urophorphyrin methylase 1. Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
RefSeq	XP_031264671.1	uncharacterized protein LOC116123014 [Pistacia vera]
Swiss-Prot	Q42606	S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UPM1 PE=1 SV=1
TrEMBL	A0A2H9ZY22	Uroporphyrinogen-III C-methyltransferase OS=Apostasia shenzhenica OX=1088818 GN=cobA PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	12	gene.Thate01g20700, gene.Thate02g25440, gene.Thate03g17220 ... gene.Thate04g09410, gene.Thate04g15940, gene.Thate04g17580, gene.Thate05g16370, gene.Thate06g19660, gene.Thate06g19950, gene.Thate06g22310, gene.Thate07g14090, gene.Thate07g14100
Poaceae	Zea mays	1	Zm00001eb067120_P001