Basic Information
Locus ID:
gene.Thate07g12080
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 190075949 | 190101697 | - | gene.Thate07g12080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 50,199.35 Da | 56.82 | 86.29 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04157 | EAP30/Vps36 family | 191 | 415 | 1.3E-41 | IPR040608 |
| SUPERFAMILY | SSF50729 | PH domain-like | 14 | 97 | 3.38E-10 | - |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 319 | 431 | 2.5E-25 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 273 | 357 | 7.89E-26 | IPR036390 |
| Gene3D | G3DSA:6.10.140.260 | - | 206 | 279 | 6.2E-23 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 55 | 162 | 1.9E-10 | IPR011993 |
| Gene3D | G3DSA:1.10.10.10 | - | 359 | 430 | 2.0E-18 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 280 | 357 | 8.3E-31 | IPR036388 |
| ProSiteProfiles | PS51495 | GLUE domain profile. | 18 | 162 | 13.806175 | IPR021648 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04920.1 | EAP30/Vps36 family protein. | 0 |
| RefSeq | XP_042442488.1 | vacuolar protein sorting-associated protein 36-like [Zingiber officinale] | 0 |
| Q9FF81 | Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana OX=3702 GN=VPS36 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1ZJY1 | Vacuolar protein-sorting-associated protein 36 OS=Anthurium amnicola OX=1678845 GN=VPS36_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29913 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11458 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006619 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg188, Sbi_jg36360 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4399 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027508 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25308, Sgl30489 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010954, gene:ENSEOMG00000028396 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013480, CQ.Regalona.r1.4BG0016020 |
| Apiaceae | Apium graveolens | 1 | Ag6G02274 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G005540, COCNU_12G005550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3241.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G17971 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013568m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37880.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g055670.2N, BniB05g029460.2N, BniB05g029470.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1588 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1619 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g17760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0696s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g12080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014740 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05655 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3645, BH02.3309, CH02.3929 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0037360, gene-QOZ80_1BG0087500 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0086170.1, HORVU.MOREX.r3.3HG0296270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055836 |
| Poaceae | Oryza coarctata | 2 | Oco01G023010, Oco02G023750 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g59800.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G313600, gene-BS78_09G064800, gene-BS78_K333100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101776, Pt_Chr0605586 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G018520, Chr05G026750, Chr08G023380, Chr08G023390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G539700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG048620, gene_TRIDC3BG054690 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G337500.1, TraesCS3B02G368700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb149970_P001, Zm00001eb369140_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31402 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11390 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1380, evm.TU.LG11.757 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1118 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6495 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3673 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016539 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11022 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13323 |
| Salicaceae | Populus euphratica | 2 | populus_peu06166, populus_peu19888 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645330 |
| Solanaceae | Solanum chilense | 1 | SOLCI001255300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008359 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24538_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2492 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32990.v3.1 |