Basic Information
Locus ID:
gene.Thate07g11440
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 172257802 | 172418913 | - | gene.Thate07g11440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 45,156.65 Da | 31.76 | 107.01 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 368 | 2.75397E-24 | - |
| Pfam | PF00168 | C2 domain | 264 | 368 | 5.4E-20 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 250 | 7.6E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 257 | 370 | 9.38E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 256 | 386 | 3.2E-26 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 365 | 1.6E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 251 | 31.230074 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 366 | 20.023191 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 308 | 321 | 3.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 3.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 330 | 338 | 3.0E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_009408018.1 | PREDICTED: synaptotagmin-5-like [Musa acuminata subsp. malaccensis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A804JSH2 | Synaptotagmin-5-like OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology