Basic Information
Locus ID:
gene.Thate07g11430
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 172000200 | 172162788 | - | gene.Thate07g11430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 13,473.90 Da | 33.73 | 96.64 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 49 | 124 | 7.43179E-20 | - |
| Pfam | PF00168 | C2 domain | 47 | 121 | 5.2E-15 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 41 | 122 | 1.56E-19 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 45 | 125 | 1.7E-18 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 30 | 125 | 15.066204 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 64 | 76 | 4.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 90 | 103 | 4.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 112 | 120 | 4.2E-6 | IPR000008 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_020692534.1 | synaptotagmin-5 [Dendrobium catenatum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K0E3 | C2 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology