Basic Information
Locus ID:
gene.Thate07g10040
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 134370692 | 134379117 | - | gene.Thate07g10040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 36,239.26 Da | 39.06 | 90.25 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13450 | NAD(P)-binding Rossmann-like domain | 46 | 93 | 2.9E-6 | - |
| SUPERFAMILY | SSF51971 | Nucleotide-binding domain | 17 | 85 | 7.06E-13 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 196 | 240 | 4.07E-8 | IPR036322 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 117 | 184 | 3.2E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 185 | 279 | 6.4E-8 | IPR015943 |
| Gene3D | G3DSA:3.50.50.60 | - | 36 | 115 | 4.6E-9 | IPR036188 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_027100055.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Coffea arabica] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A426Y1F0 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Ensete ventricosum OX=4639 GN=B296_00055011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology