HalophFGD

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Basic Information
Locus ID: gene.Thate07g09090
Species & Taxonomic ID: Thalassia testudinum & 55497
Genome Assembly: GCA_037157565.1
Description: RING/Ubox like zinc-binding domain
Maps and Mapping Data
Chromosome Start End Strand ID
Chr07 101789199 101793943 + gene.Thate07g09090
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.58 17,090.28 Da 56.21 71.47 -0.37
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00179 Ubiquitin-conjugating enzyme 39 89 3.5E-7 IPR000608
SUPERFAMILY SSF54495 UBC-like 39 90 8.11E-9 IPR016135
Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme 34 136 8.9E-8 IPR016135
Best hit
Source Best Hit ID Description E-value
TAIR AT5G60170.1 RNA binding (RRM/RBD/RNP motifs) family protein. 0
RefSeq XP_009382879.1 PREDICTED: uncharacterized protein LOC103970709 isoform X2 [Musa acuminata subsp. malaccensis] 0
Swiss-Prot Q09818 Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1 0
TrEMBL A0A8R7UHD2 CCR4-NOT transcription complex subunit 4 OS=Triticum urartu OX=4572 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Hydrocharitaceae Thalassia testudinum 8 gene.Thate01g12950, gene.Thate02g16640, gene.Thate02g27670 ...
gene.Thate02g27720, gene.Thate06g06810, gene.Thate06g06830, gene.Thate07g09090, gene.Thate09g20130
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