Basic Information
Locus ID:
gene.Thate07g07720
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ccr4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 69539475 | 69540308 | + | gene.Thate07g07720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 31,323.07 Da | 44.80 | 86.61 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 157 | 243 | 7.8E-7 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 11 | 137 | 2.7E-8 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 8 | 265 | 7.59E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 269 | 3.1E-100 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_049933304.1 | probable CCR4-associated factor 1 homolog 7 [Nymphaea colorata] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8BGP9 | poly(A)-specific ribonuclease OS=Nelumbo nucifera OX=4432 GN=LOC104610704 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology