Basic Information
Locus ID:
gene.Thate07g07340
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 65311566 | 65363729 | + | gene.Thate07g07340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 53,674.52 Da | 53.16 | 90.71 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.8E-6 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 269 | 2.3E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 4.7E-16 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 1.49E-51 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 381 | 7.07E-9 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 142 | 6.6E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 312 | 388 | 4.3E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 285 | 8.6E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 9.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 286 | 4700.0 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 4.9E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 6.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 1.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.9E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.91158 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.293642 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.50245 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.966515 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.691612 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.20864 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 11.558956 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.560909 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.675228 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.6979 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 8.4E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 8.4E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010914066.1 | probable E3 ubiquitin-protein ligase XBOS32 [Elaeis guineensis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7BKM3 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103699530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology