Basic Information
Locus ID:
gene.Thate07g07050
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 61181604 | 61216728 | + | gene.Thate07g07050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 31,295.42 Da | 64.02 | 86.69 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 85 | 133 | 1.53741E-16 | - |
| Pfam | PF12906 | RING-variant domain | 85 | 132 | 9.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 137 | 2.74E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 144 | 1.7E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 84 | 133 | 5.8E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 77 | 139 | 20.994884 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_012856280.1 | PREDICTED: E3 ubiquitin-protein ligase MARCH8 [Erythranthe guttata] | 0 |
| TrEMBL | A0A022Q247 | RING-CH-type domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a012242mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology