Basic Information
Locus ID:
gene.Thate07g05650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 38993278 | 38994063 | - | gene.Thate07g05650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 27,975.90 Da | 58.31 | 71.00 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 82 | 125 | 2.29266E-16 | - |
| Pfam | PF13639 | Ring finger domain | 82 | 125 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 131 | 9.13E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 130 | 5.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 124 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 193 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_015901416.2 | RING-H2 finger protein ATL3 [Ziziphus jujuba var. spinosa] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P4BET1 | RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107434456 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology