Basic Information
Locus ID:
gene.Thate07g04410
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 25591424 | 25592867 | - | gene.Thate07g04410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 45,856.83 Da | 80.38 | 69.64 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 221 | 264 | 9.5642E-16 | - |
| Pfam | PF13639 | Ring finger domain | 221 | 264 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 271 | 2.94E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 268 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 263 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 264 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 389 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009405146.2 | PREDICTED: RING-H2 finger protein ATL52-like [Musa acuminata subsp. malaccensis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4S8IPM7 | RING-type E3 ubiquitin transferase OS=Musa balbisiana OX=52838 GN=C4D60_Mb06t10950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene.Thate07g04410.