Basic Information
Locus ID:
gene.Thate07g03560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18430227 | 18438328 | - | gene.Thate07g03560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 76,923.14 Da | 51.91 | 94.71 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 119 | 157 | 1.2E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 178 | 224 | 1.8E-21 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 181 | 645 | 5.89E-35 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 117 | 152 | 1.44E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 159 | 690 | 7.1E-170 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 116 | 157 | 2.4E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 267 | 301 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 483 | 507 | 4.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 216 | 240 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 543 | 566 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 592 | 617 | 470.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 121 | 162 | 2.9E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 241 | 266 | 43.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SD78 | transport inhibitor response 1-like protein Os05g0150500 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology