Basic Information
Locus ID:
gene.Thate07g03140
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 16127277 | 16129163 | - | gene.Thate07g03140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 67,010.18 Da | 43.17 | 92.88 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 543 | 565 | 0.02 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 190 | 212 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 241 | 263 | 0.81 | IPR001611 |
| Pfam | PF12937 | F-box-like | 34 | 66 | 5.4E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 151 | 334 | 4.51E-29 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 69 | 2.88E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 342 | 607 | 1.13E-23 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 72 | 1.3E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 432 | 626 | 1.9E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 345 | 427 | 2.6E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 266 | 344 | 1.3E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 265 | 2.9E-25 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 348 | 373 | 12.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 37 | 79 | 1.6E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 543 | 567 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 215 | 240 | 4.9E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 267 | 291 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 569 | 594 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 241 | 266 | 0.15 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 317 | 343 | 340.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 515 | 30.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 517 | 542 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 189 | 214 | 0.0074 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 459 | 484 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 374 | 399 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 163 | 188 | 1.5 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010264613.1 | PREDICTED: EIN3-binding F-box protein 2-like [Nelumbo nucifera] | 0 |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology