Basic Information
Locus ID:
gene.Thate06g23940
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 352779445 | 352784835 | - | gene.Thate06g23940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 24,185.00 Da | 30.57 | 111.35 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 145 | 206 | 1.8E-8 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 128 | 203 | 2.08E-16 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 129 | 211 | 2.0E-21 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 144 | 222 | 11.298026 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 150 | 173 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53810.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_031257484.1 | probable L-type lectin-domain containing receptor kinase S.5, partial [Pistacia vera] | 0 |
| Q9M345 | L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK42 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843XLM2 | Protein kinase domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_053110 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah001975, Ah001976 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30062370 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0944 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g31340, gene.Thate01g31360, gene.Thate06g23940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0430540.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g16670.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704353 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G005290 |
| Poaceae | Zea mays | 1 | Zm00001eb148870_P001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16554 |