Basic Information
Locus ID:
gene.Thate06g23560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 339690747 | 339691682 | + | gene.Thate06g23560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 35,382.13 Da | 58.27 | 58.62 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 191 | 232 | 3.09502E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 8 | 39 | 2.1E-8 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 190 | 232 | 2.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 245 | 1.66E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 238 | 1.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 191 | 231 | 3.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 232 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 280 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_008788576.1 | probable E3 ubiquitin-protein ligase RHC1A [Phoenix dactylifera] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BZK7 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103706291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology