Basic Information
Locus ID:
gene.Thate06g22020
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 275540999 | 275811965 | + | gene.Thate06g22020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 95,915.08 Da | 57.76 | 77.40 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 25 | 124 | 5.37103E-12 | - |
| CDD | cd00159 | RhoGAP | 185 | 324 | 3.24824E-32 | - |
| Pfam | PF00169 | PH domain | 24 | 128 | 1.5E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 616 | 696 | 5.8E-22 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 185 | 329 | 4.3E-32 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 185 | 379 | 1.29E-34 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 20 | 135 | 1.07E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 11 | 130 | 4.9E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 155 | 378 | 4.9E-42 | IPR008936 |
| SMART | SM00233 | PH_update | 23 | 131 | 2.4E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 182 | 373 | 6.1E-28 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 176 | 376 | 30.474627 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 22 | 129 | 15.1402 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 407 | - | - |
| Coils | Coil | Coil | 665 | 699 | - | - |
| Coils | Coil | Coil | 574 | 594 | - | - |
| Coils | Coil | Coil | 822 | 842 | - | - |
| Coils | Coil | Coil | 606 | 640 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_010926988.1 | rho GTPase-activating protein 7 isoform X2 [Elaeis guineensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RR11 | rho GTPase-activating protein 7 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105049125 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology