Basic Information
Locus ID:
gene.Thate06g20380
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
small subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 215712073 | 215787802 | - | gene.Thate06g20380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 20,288.40 Da | 38.56 | 94.21 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 128 | 162 | 2.6E-4 | IPR003653 |
| SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 20 | 93 | 2.94E-12 | IPR011004 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 121 | 169 | 2.16E-6 | IPR038765 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 1 | 114 | 2.6E-23 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00500 (Starch and sucrose metabolism)
map00500 (Starch and sucrose metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko02026 (Biofilm formation - Escherichia coli)
map02026 (Biofilm formation - Escherichia coli)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48300.1 | ADP glucose pyrophosphorylase 1. Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested. | 0 |
| RefSeq | XP_045827797.1 | glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic-like [Trifolium pratense] | 0 |
| P52416 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba OX=3906 GN=AGPC PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J8NCS0 | Glucose-1-phosphate adenylyltransferase OS=Gossypium lobatum OX=34289 GN=Golob_006983 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g20210, gene.Thate06g04540, gene.Thate06g20380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0109 |