Basic Information
Locus ID:
gene.Thate06g20290
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 214633144 | 214633812 | - | gene.Thate06g20290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 24,378.06 Da | 59.92 | 89.19 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 218 | 7.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 221 | 7.51E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 222 | 1.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 217 | 5.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 218 | 12.459772 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020180582.1 | probable E3 ubiquitin-protein ligase ATL45 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A8C3V276 | RING-type domain-containing protein OS=Catharus ustulatus OX=91951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g20260, gene.Thate06g20290 |