Basic Information
Locus ID:
gene.Thate06g20260
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 214548414 | 214549067 | - | gene.Thate06g20260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 23,932.61 Da | 56.22 | 80.05 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 204 | 1.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 208 | 1.27E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 207 | 4.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 203 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 204 | 11.692616 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039052070.1 | RING-H2 finger protein ATL29-like [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A1VS05 | E3 ubiquitin-protein ligase RING1-like OS=Morella rubra OX=262757 GN=CJ030_MR5G018794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g20260, gene.Thate06g20290 |