Basic Information
Locus ID:
gene.Thate06g19130
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 171438906 | 171442890 | + | gene.Thate06g19130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 46,941.57 Da | 45.77 | 78.71 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 71 | 387 | 5.3E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 38 | 425 | 4.85E-128 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 26 | 431 | 1.2E-120 | IPR012334 |
| SMART | SM00710 | pbh1 | 201 | 227 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 250 | 271 | 5400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 281 | 302 | 750.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 34 | 56 | 8400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 310 | 331 | 2800.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 258 | 271 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_020274586.1 | polygalacturonase At1g48100-like [Asparagus officinalis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A822YK79 | Polygalacturonase At1g80170 OS=Nelumbo nucifera OX=4432 GN=HUJ06_011851 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology