Basic Information
Locus ID:
gene.Thate06g19060
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 166534693 | 166607650 | + | gene.Thate06g19060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 41,655.53 Da | 68.75 | 57.57 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 315 | 355 | 1.27951E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 314 | 360 | 1.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 361 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 300 | 365 | 3.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 316 | 354 | 2.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 355 | 11.486073 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 58 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039128000.1 | probable E3 ubiquitin-protein ligase LUL4 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YF74 | RING-type E3 ubiquitin transferase (Fragment) OS=Anthurium amnicola OX=1678845 GN=MGRN1_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology