Basic Information
Locus ID:
gene.Thate06g15790
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 112171256 | 112221195 | - | gene.Thate06g15790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 21,509.10 Da | 42.82 | 73.91 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 105 | 187 | 5.1539E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 177 | 1.0E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 99 | 178 | 5.64E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 99 | 191 | 1.4E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 106 | 182 | 3.2E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 191 | 12.389781 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.5 | - | 0 |
| RefSeq | XP_020244417.1 | nuclear speckle RNA-binding protein A-like [Asparagus officinalis] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CSV1 | nuclear speckle RNA-binding protein A-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103718657 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology