Basic Information
Locus ID:
gene.Thate06g14710
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 100221583 | 100223031 | + | gene.Thate06g14710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 49,869.60 Da | 69.05 | 75.42 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 13 | 58 | 5.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 72 | 8.63E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 105 | 1.9E-8 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 10.000863 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 260 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12350.1 | F-box family protein. | 0 |
| RefSeq | XP_009394356.1 | PREDICTED: F-box protein At3g12350-like [Musa acuminata subsp. malaccensis] | 0 |
| Q84WW1 | F-box protein At3g12350 OS=Arabidopsis thaliana OX=3702 GN=At3g12350 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1XM14 | F-box protein At3g12350 OS=Anthurium amnicola OX=1678845 GN=At3g12350_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10726 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4836 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036697 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39681, Sbi_jg55030 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14654 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013185 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12525, Sgl17798 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018158, gene:ENSEOMG00000035288 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0017410, CQ.Regalona.r1.1BG0007810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043000 |
| Apiaceae | Apium graveolens | 2 | Ag2G02282, Ag4G02190 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003650 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711325, gene-LOC103722769, gene-LOC120105055 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1089.V1.1, AsparagusV1_08.1090.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G21127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028685m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10510.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g034260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1280 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g13810 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09820, gene.Thate06g14710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1207, nbisL1-mrna-5211 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.330 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027497 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33063 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3586, BH05.3606, CH05.3778 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0448240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002192, gene-QYE76_002469 |
| Poaceae | Oryza coarctata | 2 | Oco23G007330, Oco24G006950 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g32630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G081900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G016640, Chr19G010130, Chr27G006300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G186200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG016010, gene_TRIDC5BG017820 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G103000.1, TraesCS5B02G107300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb264620_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30189, nbis-gene-48651 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25118 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.648, evm.TU.LG12.1018 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g25880, gene.Posoc06g18100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.903, evm.TU.Scaffold_8_RagTag.904 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9334 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20417 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20620 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11451 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17118 |
| Salicaceae | Populus euphratica | 1 | populus_peu32065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627764 |
| Solanaceae | Solanum chilense | 1 | SOLCI007093300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015679 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31071_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2670 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10940.v3.1 |