Basic Information
Locus ID:
gene.Thate06g10820
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 63278039 | 63281176 | + | gene.Thate06g10820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 66,160.53 Da | 58.79 | 91.54 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 82 | 128 | 1.9E-22 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 170 | 190 | 0.0047 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 500 | 517 | 1.2 | IPR001611 |
| Pfam | PF18511 | F-box | 24 | 62 | 1.5E-21 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 556 | 3.92E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 56 | 2.62E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 591 | 5.5E-164 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 61 | 5.1E-18 | - |
| SMART | SM00256 | fbox_2 | 25 | 66 | 4.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 145 | 170 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 451 | 474 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 500 | 524 | 50.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 120 | 144 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 391 | 415 | 3.5 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_026663364.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Phoenix dactylifera] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D1XNE5 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Anthurium amnicola OX=1678845 GN=TIR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology