Basic Information
Locus ID:
gene.Thate06g09900
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 57637532 | 57658937 | - | gene.Thate06g09900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 53,786.63 Da | 64.08 | 86.54 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 22 | 164 | 1.47908E-44 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 234 | 277 | 1.32326E-23 | - |
| Pfam | PF02225 | PA domain | 57 | 142 | 1.4E-12 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 234 | 277 | 2.4E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 74 | 164 | 1.27E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 291 | 1.14E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 283 | 7.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 27 | 148 | 7.6E-29 | - |
| SMART | SM00184 | ring_2 | 235 | 276 | 5.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 277 | 11.987676 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_008783392.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A7LU64 | E3 ubiquitin-protein ligase RNF13-like protein OS=Albuca bracteata OX=82047 GN=UPL-5 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology