Basic Information
Locus ID:
gene.Thate06g09850
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 57380487 | 57419781 | + | gene.Thate06g09850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 135,132.86 Da | 46.25 | 80.76 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 441 | 640 | 2.64185E-99 | - |
| CDD | cd18794 | SF2_C_RecQ | 641 | 774 | 6.66793E-71 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 659 | 764 | 5.2E-17 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1023 | 1091 | 4.3E-13 | IPR002121 |
| Pfam | PF09382 | RQC domain | 865 | 980 | 2.3E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 452 | 620 | 1.3E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 776 | 858 | 1.6E-16 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 639 | 905 | 1.66E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 285 | 783 | 3.55E-43 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1023 | 1098 | 5.01E-12 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 641 | 860 | 3.6E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 861 | 979 | 4.2E-21 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1019 | 1106 | 8.6E-19 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 414 | 640 | 5.4E-92 | IPR027417 |
| SMART | SM00956 | RQC_2 | 867 | 978 | 2.1E-24 | IPR018982 |
| SMART | SM00341 | hrdc7 | 1023 | 1101 | 0.003 | IPR002121 |
| SMART | SM00487 | ultradead3 | 446 | 649 | 1.3E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 684 | 765 | 2.2E-26 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 442 | 918 | 5.7E-165 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 458 | 633 | 21.864128 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 674 | 706 | 8.730992 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 658 | 820 | 20.104233 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1019 | 1101 | 15.167414 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 572 | 581 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1115 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019708223.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Elaeis guineensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PMF0 | DNA helicase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105051907 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology