halophFGD

Basic Information

Locus ID: gene.Thate06g09290

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: PHD finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr06	54514789	54528213	+	gene.Thate06g09290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.82	73,702.90 Da	37.92	83.30	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15556	PHD_MMD1_like	524	569	3.48473E-20	-
Pfam	PF00628	PHD-finger	525	570	5.0E-9	IPR019787
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	518	578	1.51E-14	IPR011011
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	518	586	6.2E-16	IPR013083
SMART	SM00249	PHD_3	524	570	1.2E-7	IPR001965

Best hit

Source	Best Hit ID	Description
TAIR	AT1G33420.2	-
RefSeq	XP_010927813.1	PHD finger protein At1g33420 [Elaeis guineensis]
Swiss-Prot	Q9C810	PHD finger protein At1g33420 OS=Arabidopsis thaliana OX=3702 GN=At1g33420 PE=1 SV=1
TrEMBL	A0A1D1Z6Q5	PHD finger protein At1g33420 OS=Anthurium amnicola OX=1678845 GN=At1g33420_2 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17106, jg39381, jg5094, jg5114
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10339, gene_11906, gene_21026
Amaranthaceae	Atriplex hortensis	3	Ah005533, Ah005563, Ah037349
Amaranthaceae	Beta vulgaris	4	BVRB_2g029070, BVRB_4g077670, BVRB_4g077930, BVRB_9g208740
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17324, Sbi_jg17339, Sbi_jg41716, Sbi_jg48393 ... Sbi_jg61959, Sbi_jg61977
Amaranthaceae	Salicornia europaea	3	Seu_jg27705, Seu_jg582, Seu_jg599
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015483, GOSA_00015496, GOSA_00023272
Amaranthaceae	Suaeda glauca	6	Sgl24336, Sgl24351, Sgl29509, Sgl29522, Sgl79140, Sgl81593
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008347, gene:ENSEOMG00000011790 ... gene:ENSEOMG00000028921, gene:ENSEOMG00000029137, gene:ENSEOMG00000037317, gene:ENSEOMG00000040377
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0006330, CQ.Regalona.r1.4AG0006520 ... CQ.Regalona.r1.4BG0006470, CQ.Regalona.r1.4BG0006640, CQ.Regalona.r1.9AG0007390, CQ.Regalona.r1.9BG0015440
Anacardiaceae	Pistacia vera	4	pistato.v30129370, pistato.v30189110, pistato.v30203010 ... pistato.v30219200
Apiaceae	Apium graveolens	7	Ag1G02102, Ag2G01050, Ag3G00463, Ag3G01627, Ag5G02369 ... Ag8G01906, AgUnG00407
Arecaceae	Cocos nucifera	5	COCNU_01G021260, COCNU_03G009600, COCNU_11G004580 ... COCNU_15G003710, scaffold008086G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103697708, gene-LOC103704801, gene-LOC103716627 ... gene-LOC103717257, gene-LOC103719266, gene-LOC113462577
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1632.V1.1, AsparagusV1_06.1557.V1.1 ... AsparagusV1_09.322.V1.1, AsparagusV1_10.1197.V1.1, AsparagusV1_10.1269.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G32746, Ftri18G09353, Ftri7G19411, Ftri9G06884 ... Ftri9G19262
Brassicaceae	Arabidopsis thaliana	4	AT1G33420.1, AT1G66170.1, AT2G01810.1, AT5G22260.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003728m.g.v1.0, Thhalv10006958m.g.v1.0 ... Thhalv10012892m.g.v1.0, Thhalv10018197m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28880.v2.2, Sp2g13240.v2.2, Sp5g21230.v2.2 ... Sp6g22980.v2.2
Brassicaceae	Brassica nigra	7	BniB02g041360.2N, BniB02g065060.2N, BniB03g035960.2N ... BniB04g009420.2N, BniB04g009430.2N, BniB05g062000.2N, BniB05g062030.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0471, Ceq01G0474, Ceq02G1634, Ceq03G2143, Ceq03G2877 ... Ceq06G2146, Ceq06G2171, Ceq08G0610, Ceq09G0821
Casuarinaceae	Casuarina glauca	7	Cgl01G0502, Cgl02G1694, Cgl03G3026, Cgl06G2260, Cgl06G2286 ... Cgl08G0578, Cgl09G0876
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g10550, gene.Cymno07g09340, gene.Cymno08g04180 ... gene.Cymno09g01450
Dunaliellaceae	Dunaliella salina	1	Dusal.0415s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate05g24720, gene.Thate06g07750, gene.Thate06g09270 ... gene.Thate06g09290
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10228
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2523, evm.TU.LG02.57, evm.TU.LG03.1133
Plantaginaceae	Plantago ovata	6	Pov_00020774, Pov_00021166, Pov_00026880, Pov_00026894 ... Pov_00039055, Pov_00039056
Plumbaginaceae	Limonium bicolor	5	Lb1G01572, Lb1G01576, Lb1G06425, Lb1G06432, Lb5G28245
Poaceae	Echinochloa crus-galli	12	AH01.816, AH02.4062, AH03.2122, AH04.872, BH01.960, BH04.837 ... BH02.4072, BH03.2289, CH01.1002, CH02.4102, CH03.2440, CH04.847
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0041880, gene-QOZ80_1BG0091780 ... gene-QOZ80_3AG0218690, gene-QOZ80_3BG0263990, gene-QOZ80_6AG0536910, gene-QOZ80_6AG0537470, gene-QOZ80_6BG0490240, gene-QOZ80_6BG0490710
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0298130.1, HORVU.MOREX.r3.4HG0337720.1 ... HORVU.MOREX.r3.4HG0344750.1, HORVU.MOREX.r3.5HG0485710.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010220, gene-QYE76_056847, gene-QYE76_062417 ... gene-QYE76_064242
Poaceae	Oryza coarctata	8	Oco01G026370, Oco02G027360, Oco05G021870, Oco06G022630 ... Oco17G006190, Oco18G006370, Oco21G003530, Oco22G004290
Poaceae	Oryza sativa	4	LOC_Os01g65600.1, LOC_Os03g50780.1, LOC_Os09g27620.1 ... LOC_Os11g12650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G103400, gene-BS78_02G199800 ... gene-BS78_03G354900, gene-BS78_05G121300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0104997, Pt_Chr0107623, Pt_Chr0204286, Pt_Chr0501994 ... Pt_Chr0502021, Pt_Chr0600037, Pt_Chr0600435, Pt_Chr0702043
Poaceae	Sporobolus alterniflorus	9	Chr01G006880, Chr02G003190, Chr03G021290, Chr05G030030 ... Chr07G018960, Chr08G020880, Chr10G008710, Chr12G030590, Chr31G003000
Poaceae	Thinopyrum elongatum	6	Tel3E01G616400, Tel4E01G086700, Tel4E01G143000 ... Tel5E01G125400, Tel5E01G378700, Tel7E01G286000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG055420, gene_TRIDC3BG061970 ... gene_TRIDC4AG035860, gene_TRIDC4AG041420, gene_TRIDC4BG014170, gene_TRIDC5AG037010
Poaceae	Triticum aestivum	12	TraesCS3A02G388800.1, TraesCS3B02G419900.1 ... TraesCS3D02G380800.1, TraesCS4A02G225500.1, TraesCS4A02G265200.1, TraesCS4B02G049600.1, TraesCS4B02G090700.1, TraesCS4D02G050000.1, TraesCS4D02G087800.1, TraesCS5A02G233600.1, TraesCS5B02G232100.1, TraesCS5D02G240500.1
Poaceae	Zea mays	4	Zm00001eb167840_P003, Zm00001eb216130_P001 ... Zm00001eb314550_P001, Zm00001eb366330_P001
Poaceae	Zoysia japonica	5	nbis-gene-11205, nbis-gene-15943, nbis-gene-19715 ... nbis-gene-27401, nbis-gene-28574
Poaceae	Zoysia macrostachya	5	Zma_g11657, Zma_g18622, Zma_g2941, Zma_g32642, Zma_g9119
Portulacaceae	Portulaca oleracea	6	evm.TU.LG06.1090, evm.TU.LG06.1314, evm.TU.LG11.428 ... evm.TU.LG11.659, evm.TU.LG18.1903, evm.TU.LG20.19
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g25020, gene.Posoc05g10410, gene.Posoc08g01350
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_15_RagTag.256, evm.TU.Scaffold_15_RagTag.257 ... evm.TU.Scaffold_15_RagTag.267, evm.TU.Scaffold_17_RagTag.718, evm.TU.Scaffold_17_RagTag.745, evm.TU.Scaffold_6_RagTag.1319, evm.TU.Scaffold_6_RagTag.1395
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-16315, nbisL1-mrna-16499, nbisL1-mrna-23410 ... nbisL1-mrna-23438, nbisL1-mrna-26491, nbisL1-mrna-26510
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-3463, nbisL1-mrna-4198, nbisL1-mrna-4834 ... nbisL1-mrna-8294, nbisL1-mrna-8435, nbisL1-mrna-874
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-1159, nbisL1-mrna-1197, nbisL1-mrna-17574 ... nbisL1-mrna-17582, nbisL1-mrna-20031, nbisL1-mrna-20070, nbisL1-mrna-22829
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.160, evm.TU.utg000001l.168 ... evm.TU.utg000011l.859, evm.TU.utg000011l.888, evm.TU.utg000013l.385, evm.TU.utg000013l.403
Rhizophoraceae	Kandelia obovata	4	Maker00004354, Maker00004602, Maker00004674, Maker00007129
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-10778, nbisL1-mrna-10797, nbisL1-mrna-11553 ... nbisL1-mrna-11560, nbisL1-mrna-13412, nbisL1-mrna-13442, nbisL1-mrna-20607, nbisL1-mrna-22431, nbisL1-mrna-23235
Rhizophoraceae	Rhizophora mangle	10	nbisL1-mrna-14302, nbisL1-mrna-14330, nbisL1-mrna-25219 ... nbisL1-mrna-25263, nbisL1-mrna-25361, nbisL1-mrna-2683, nbisL1-mrna-2690, nbisL1-mrna-3876, nbisL1-mrna-3915, nbisL1-mrna-3916
Salicaceae	Populus euphratica	6	populus_peu07237, populus_peu09294, populus_peu16379 ... populus_peu19777, populus_peu21258, populus_peu24822
Solanaceae	Lycium barbarum	4	gene-LOC132612587, gene-LOC132612611, gene-LOC132613673 ... gene-LOC132634293
Solanaceae	Solanum chilense	3	SOLCI001517400, SOLCI002088400, SOLCI004631500
Solanaceae	Solanum pennellii	4	gene-LOC107003584, gene-LOC107014193, gene-LOC107017475 ... gene-LOC107017988
Tamaricaceae	Reaumuria soongarica	3	STRG.15008_chr08_-, gene_18002, gene_5082
Tamaricaceae	Tamarix chinensis	2	TC05G2245, TC06G2609
Zosteraceae	Zostera marina	5	Zosma01g08330.v3.1, Zosma03g08780.v3.1, Zosma03g09230.v3.1 ... Zosma03g31030.v3.1, Zosma04g16330.v3.1