Basic Information
Locus ID:
gene.Thate06g09090
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 53306080 | 53307199 | + | gene.Thate06g09090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 34,429.05 Da | 47.76 | 70.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 268 | 307 | 3.7E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 89 | 1.35E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 107 | 225 | 2.75E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 272 | 310 | 5.06E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 99 | 261 | 2.1E-14 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 262 | 311 | 1.4E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 265 | 307 | 11.386615 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_020680815.1 | F-box protein At1g67340 [Dendrobium catenatum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0VWU2 | F-box protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca022202 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology