Basic Information
Locus ID:
gene.Thate06g07750
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PHD finger protein MALE STERILITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 45203707 | 45205426 | + | gene.Thate06g07750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 60,743.75 Da | 41.19 | 96.37 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 491 | 536 | 7.44248E-23 | - |
| Pfam | PF00628 | PHD-finger | 492 | 538 | 1.3E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 487 | 539 | 1.48E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 542 | 1.1E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 491 | 537 | 2.9E-5 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 492 | 536 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_029119645.1 | PHD finger protein PERSISTENT TAPETAL CELL 1 [Elaeis guineensis] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PBA1 | PHD finger protein MALE STERILITY 1 OS=Zostera marina OX=29655 GN=ZOSMA_2G02440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology