Basic Information
Locus ID:
gene.Thate06g06830
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 40393721 | 40399907 | + | gene.Thate06g06830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 16,948.60 Da | 49.42 | 88.08 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 27 | 123 | 1.8777E-28 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 34 | 131 | 1.0E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 20 | 124 | 1.31E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 4 | 128 | 1.2E-27 | IPR016135 |
| SMART | SM00212 | ubc_7 | 14 | 138 | 2.3E-12 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 12 | 146 | 22.878475 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16740.1 | ubiquitin-conjugating enzyme 29. | 0 |
| RefSeq | XP_007213111.1 | ubiquitin-conjugating enzyme E2 11 [Prunus persica] | 0 |
| Q9SLE4 | Ubiquitin-conjugating enzyme E2 29 OS=Arabidopsis thaliana OX=3702 GN=UBC29 PE=2 SV=1 | 0 | |
| TrEMBL | D3PIK7 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Lepeophtheirus salmonis OX=72036 GN=UBCD1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 8 | gene.Thate01g12950, gene.Thate02g16640, gene.Thate02g27670 ... |