Basic Information
Locus ID:
gene.Thate06g06100
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 37488314 | 37569442 | - | gene.Thate06g06100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 104,917.23 Da | 43.19 | 82.91 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 3 | 196 | 1.37711E-93 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 176 | 1.5E-19 | IPR011545 |
| Pfam | PF09382 | RQC domain | 402 | 497 | 1.9E-20 | IPR018982 |
| Pfam | PF14493 | Helix-turn-helix domain | 651 | 748 | 3.6E-17 | IPR029491 |
| Pfam | PF00570 | HRDC domain | 548 | 614 | 6.5E-12 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 2.0E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 219 | 322 | 6.5E-19 | IPR001650 |
| SUPERFAMILY | SSF47819 | HRDC-like | 543 | 620 | 7.41E-15 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 496 | 1.5E-21 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 9.31E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 522 | 2.3E-30 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 5.4E-54 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 542 | 620 | 6.0E-16 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 196 | 4.9E-74 | IPR027417 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 4.5E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 8.3E-33 | IPR014001 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 2.6E-19 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 3 | 455 | 9.9E-149 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.995556 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 544 | 624 | 17.511457 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 18.700043 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 784 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_019706458.1 | uncharacterized protein LOC105045099 [Elaeis guineensis] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A1D1YAD1 | ATP-dependent DNA helicase OS=Anthurium amnicola OX=1678845 GN=recQ_11 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology