Basic Information
Locus ID:
gene.Thate06g05230
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 31477590 | 31482595 | - | gene.Thate06g05230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 53,738.98 Da | 40.49 | 102.81 | 0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 46 | 220 | 1.6E-29 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 358 | 488 | 2.3E-8 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 487 | 3.79E-62 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 18 | 490 | 1.5E-80 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 24 | 481 | 35.686928 | IPR020846 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 265 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_034696778.1 | organic cation/carnitine transporter 7 [Vitis riparia] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QED4 | MFS domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_002164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology