Basic Information
Locus ID:
gene.Thate06g04850
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 29905225 | 29908918 | - | gene.Thate06g04850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 66,706.05 Da | 55.97 | 47.94 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 464 | 546 | 2.2E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 564 | 595 | 2.2E-6 | IPR007529 |
| SUPERFAMILY | SSF101494 | Stathmin | 446 | 529 | 6.54E-5 | IPR036002 |
| SMART | SM01406 | PAPA_1_2 | 464 | 548 | 5.0E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 518 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
| Coils | Coil | Coil | 463 | 490 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_043725242.1 | nucleolin 1-like isoform X1 [Telopea speciosissima] | 0 |
| TrEMBL | A0A1U8AC46 | uncharacterized protein LOC104598774 OS=Nelumbo nucifera OX=4432 GN=LOC104598774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology