Basic Information
Locus ID:
gene.Thate06g04700
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 28604958 | 28632269 | - | gene.Thate06g04700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 57,513.28 Da | 47.97 | 78.87 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 336 | 513 | 2.89911E-112 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 335 | 442 | 4.1E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 100 | 3.7E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 468 | 3.66E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 126 | 1.1E-31 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 327 | 513 | 1.2E-72 | - |
| SMART | SM00232 | pad1_6 | 338 | 466 | 4.2E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 339 | 469 | 31.641823 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010931734.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Elaeis guineensis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9RT81 | AMSH-like ubiquitin thioesterase 3 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105052580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology