halophFGD

Basic Information

Locus ID: gene.Thate06g04540

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: small subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr06	27824807	27825722	+	gene.Thate06g04540

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	21,812.70 Da	39.68	94.73	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	61	124	3.97E-9	IPR036322
SUPERFAMILY	SSF51161	Trimeric LpxA-like enzymes	120	196	5.74E-13	IPR011004
Gene3D	G3DSA:2.160.10.10	Hexapeptide repeat proteins	99	198	6.1E-24	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K00975 (glucose-1-phosphate adenylyltransferase [EC:2.7.7.27])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism) ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko02026 (Biofilm formation - Escherichia coli) map02026 (Biofilm formation - Escherichia coli)

Module:

M00565 (Trehalose biosynthesis, D-glucose 1P => trehalose)

Reaction:

R00948 (ATP + D-Glucose 1-phosphate <=> Diphosphate + ADP-glucose)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G48300.1	ADP glucose pyrophosphorylase 1. Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
RefSeq	XP_050903533.1	glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic [Pisum sativum]
Swiss-Prot	P52416	Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba OX=3906 GN=AGPC PE=2 SV=1
TrEMBL	A0A7J8M705	Glucose-1-phosphate adenylyltransferase OS=Gossypium lobatum OX=34289 GN=Golob_017390 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g20210, gene.Thate06g04540, gene.Thate06g20380
Tamaricaceae	Tamarix chinensis	1	TC03G0109