Basic Information
Locus ID:
gene.Thate06g03710
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 24134919 | 24138918 | - | gene.Thate06g03710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 103,405.02 Da | 41.60 | 105.76 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 691 | 957 | 9.08911E-89 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 687 | 953 | 3.0E-41 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 266 | 321 | 4.8E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 382 | 441 | 3.5E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 502 | 524 | 1.5 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 64 | 3.4E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 214 | 234 | 0.24 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 117 | 136 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 201 | 2.7E-9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 475 | 490 | 2.0 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 687 | 955 | 3.24E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 374 | 1.5E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 282 | 554 | 6.12E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 762 | 968 | 4.0E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 679 | 761 | 4.3E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 302 | 2.9E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 303 | 573 | 2.9E-82 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 212 | 235 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 380 | 412 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 428 | 452 | 6.3 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 284 | 310 | 220.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 452 | 478 | 360.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 500 | 526 | 3.9 | - |
| SMART | SM00365 | LRR_sd22_2 | 428 | 443 | 220.0 | - |
| SMART | SM00369 | LRR_typ_2 | 404 | 427 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 115 | 139 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 500 | 524 | 8.9 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 188 | 207 | 800.0 | - |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 2.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 403 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 308 | 332 | 7.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 284 | 307 | 320.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 685 | 957 | 35.467167 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 691 | 714 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 311 | 324 | 9.7E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 500 | 513 | 9.7E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56370.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_008792235.3 | probable LRR receptor-like serine/threonine-protein kinase IRK [Phoenix dactylifera] | 0 |
| Q9LY03 | Probable LRR receptor-like serine/threonine-protein kinase IRK OS=Arabidopsis thaliana OX=3702 GN=IRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C5R5 | probable LRR receptor-like serine/threonine-protein kinase IRK OS=Phoenix dactylifera OX=42345 GN=LOC103708906 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg10080, jg14189, jg14694, jg14695, jg3163, jg3164 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14589, gene_17093 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031537, Ah032098 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g038950, BVRB_7g156940 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2159, Sbi_jg30122, Sbi_jg34349, Sbi_jg43577 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18325, Seu_jg2615 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004088, GOSA_00005874 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl66077, Sgl70392, Sgl70447, Sgl70448, Sgl71118, Sgl74701 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005558, gene:ENSEOMG00000014650 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0002900, CQ.Regalona.r1.2BG0004080 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178080, pistato.v30269220 |
| Apiaceae | Apium graveolens | 2 | Ag10G02720, Ag4G01813 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G004540, COCNU_04G012590, COCNU_12G006210 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702137, gene-LOC103706252, gene-LOC103708906 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.370.V1.1, AsparagusV1_02.371.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G32005, Ftri17G07980 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G56370.1, AT5G01890.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005773m.g.v1.0, Thhalv10012579m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g06140.v2.2, Sp6g41130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g031920.2N, BniB07g008290.2N, BniB08g070980.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0024, Ceq08G0886 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0026, Cgl08G0903 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-3724, nbisL1-mrna-4311, nbisL1-mrna-5366 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.867, evm.TU.LG02.1691 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002594, Pov_00011610, Pov_00040662 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G37369, Lb1G06279, Lb2G09546, Lb2G09551, Lb2G14487 ... |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3731, AH02.3702, AH05.2027, BH01.4080, BH02.3278 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0038090, gene-QOZ80_1BG0088090 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0297580.1, HORVU.MOREX.r3.4HG0378630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_055672, gene-QYE76_068066 |
| Poaceae | Oryza coarctata | 6 | Oco01G023490, Oco02G024260, Oco05G012920, Oco06G013550 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g60670.1, LOC_Os02g51050.1, LOC_Os03g21730.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G362700, gene-BS78_03G318900 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102621, Pt_Chr0300669, Pt_Chr0601817, Pt_Chr0601845 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G034110, Chr02G006160, Chr03G018900, Chr04G010800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G550400, Tel4E01G308200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG049630, gene_TRIDC3BG055880 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G344300.1, TraesCS3B02G376200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb016040_P001, Zm00001eb149530_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-11566, nbis-gene-14252, nbis-gene-1665 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1256, Zma_g26999, Zma_g8898 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG02.2912, evm.TU.LG03.2075, evm.TU.LG05.1192 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g33220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.300, evm.TU.Scaffold_1_RagTag.1921 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14121, nbisL1-mrna-5687 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12669, nbisL1-mrna-9494 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14267, nbisL1-mrna-3611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.176, evm.TU.utg000016l.762 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010232, Maker00016848 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-423, nbisL1-mrna-4892 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13854, nbisL1-mrna-18914 |
| Salicaceae | Populus euphratica | 4 | populus_peu11513, populus_peu16359, populus_peu19152 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132611247, gene-LOC132631077, gene-LOC132638162 |
| Solanaceae | Solanum chilense | 3 | SOLCI002136200, SOLCI003555600, SOLCI003717200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023271, gene-LOC107023573, gene-LOC107031799 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1656_chr01_+, gene_62 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0121, TC02G2367, TC07G0983 |
| Zosteraceae | Zostera marina | 3 | Zosma01g19390.v3.1, Zosma02g22180.v3.1, Zosma06g13900.v3.1 |