Basic Information
Locus ID:
gene.Thate06g02660
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 17645811 | 17649233 | - | gene.Thate06g02660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 65,755.88 Da | 31.45 | 90.10 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 9.98429E-93 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 2.13649E-87 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 352 | 6.5E-21 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 1.5E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 211 | 2.3E-34 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 1.64E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 382 | 2.86E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 219 | 2.95E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 217 | 3.5E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 7.0E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 397 | 590 | 1.4E-56 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 600 | 2.3E-213 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_009385546.1 | PREDICTED: pyruvate decarboxylase 1-like [Musa acuminata subsp. malaccensis] | 0 |
| A2Y5L9 | Pyruvate decarboxylase 1 OS=Oryza sativa subsp. indica OX=39946 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A804HX58 | pyruvate decarboxylase OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology