Basic Information
Locus ID:
gene.Thate06g02640
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 17616461 | 17620538 | - | gene.Thate06g02640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 81,486.44 Da | 40.68 | 91.06 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 556 | 738 | 1.57172E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 197 | 358 | 2.2921E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 391 | 507 | 1.1E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 194 | 361 | 1.8E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 601 | 725 | 1.7E-16 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 556 | 750 | 1.18E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 386 | 533 | 1.66E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 194 | 368 | 2.18E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 190 | 367 | 1.7E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 549 | 740 | 6.6E-58 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 381 | 543 | 1.3E-40 | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010922580.1 | pyruvate decarboxylase 2 [Elaeis guineensis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9R928 | pyruvate decarboxylase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology