Basic Information
Locus ID:
gene.Thate06g01560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 9123071 | 9140410 | - | gene.Thate06g01560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 73,234.84 Da | 31.58 | 73.06 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 452 | 640 | 3.9703E-52 | - |
| CDD | cd10320 | RGL4_N | 13 | 307 | 2.39438E-73 | - |
| CDD | cd10316 | RGL4_M | 341 | 440 | 2.85602E-30 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 365 | 435 | 1.1E-20 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 450 | 639 | 3.0E-51 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 20 | 209 | 4.8E-84 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 448 | 640 | 1.19E-47 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 26 | 305 | 1.95E-7 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 339 | 440 | 6.67E-8 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 15 | 314 | 4.9E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 448 | 640 | 2.3E-18 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 338 | 439 | 7.7E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_020242826.1 | probable rhamnogalacturonate lyase B isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A1D1ZBA2 | rhamnogalacturonan endolyase OS=Anthurium amnicola OX=1678845 GN=rhiE_23 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology