Basic Information
Locus ID:
gene.Thate06g00890
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 5679079 | 5681740 | - | gene.Thate06g00890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 48,064.83 Da | 52.67 | 86.73 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 17 | 110 | 1.7E-11 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 112 | 183 | 8.9E-11 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 196 | 221 | 3.6E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 378 | 2.66E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 11 | 249 | 1.44E-49 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 390 | 1.1E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 150 | 307 | 3.4E-21 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 149 | 6.8E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 158 | 187 | 0.032 | IPR002110 |
| SMART | SM00248 | ANK_2a | 79 | 108 | 6.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 195 | 224 | 0.085 | IPR002110 |
| SMART | SM00248 | ANK_2a | 113 | 142 | 2.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 46 | 75 | 0.026 | IPR002110 |
| SMART | SM00248 | ANK_2a | 11 | 40 | 1600.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 79 | 111 | 10.87314 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 158 | 183 | 10.205854 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 46 | 78 | 9.37738 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 195 | 221 | 11.930395 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 158 | 190 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 371 | 9.553431 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 195 | 227 | 12.52916 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 113 | 145 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 79 | 106 | 9.728291 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 113 | 135 | 8.720098 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 337 | 346 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 407 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28840.1 | XB3 ortholog 1 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_008784535.1 | E3 ubiquitin-protein ligase XB3-like [Phoenix dactylifera] | 0 |
| Q65XV2 | E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica OX=39947 GN=XB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YSZ8 | Putative E3 ubiquitin-protein ligase XBAT31 OS=Anthurium amnicola OX=1678845 GN=XBAT31_5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16605, jg3383, jg37969, jg8338, jg8339 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5899 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah006327, Ah006516, Ah028046 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g174010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1777, Sbi_jg34753 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003182 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73008, Sgl76548 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000010478, gene:ENSEOMG00000020952 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002710, CQ.Regalona.r1.9BG0002960 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30060090, pistato.v30270750 |
| Apiaceae | Apium graveolens | 4 | Ag2G00877, Ag2G02750, Ag6G02522, Ag6G02528 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G001870, COCNU_04G015240, COCNU_12G007710 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103696788, gene-LOC103703462, gene-LOC103716502 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.353.V1.1, AsparagusV1_07.240.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G33912, Ftri11G07776, Ftri12G15801, Ftri9G33156 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g015000.2N, BniB06g018010.2N, BniB07g020640.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1170, Ceq08G2188 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1199, Cgl08G2347 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g00680, gene.Cymno04g18040 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0011s00012.v1.0, Dusal.0195s00014.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 6 | gene.Thate01g00550, gene.Thate01g33960, gene.Thate03g14870 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1243, evm.TU.LG09.1286 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003339, Pov_00016156 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G09090, Lb2G14659, Lb2G14662, Lb4G23459, Lb7G33176 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4175, AH05.732, BH01.4491, BH05.797, CH02.1531 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107750, gene-QOZ80_2BG0161360 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0005750.1, HORVU.MOREX.r3.3HG0329760.1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_008788, gene-QYE76_018796, gene-QYE76_018799 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G031170, Oco02G032350, Oco05G009540, Oco06G009890 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os01g39120.1, LOC_Os01g74320.1, LOC_Os03g16780.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G401300, gene-BS78_09G013200 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0102296, Pt_Chr0102323, Pt_Chr0500636, Pt_Chr0601185 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G031040, Chr04G007770, Chr07G003840, Chr12G008600 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G075100, Tel1E01G495300, Tel3E01G900800 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG003820, gene_TRIDC1BG004840 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G034300.2, TraesCS1B02G050200.3 ... |
| Poaceae | Zea mays | 8 | Zm00001eb009020_P001, Zm00001eb012360_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18369, nbis-gene-18370, nbis-gene-18371 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27567, Zma_g3921 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.847, evm.TU.LG24.843 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g37390, gene.Posoc01g39740, gene.Posoc02g01470 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.262, evm.TU.Scaffold_13_RagTag.815 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24541, nbisL1-mrna-30199 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11958, nbisL1-mrna-19662 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16204, nbisL1-mrna-19540 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.487, evm.TU.utg000027l.415 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015379, Maker00018199 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4405, nbisL1-mrna-5571 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11764, nbisL1-mrna-14973 |
| Salicaceae | Populus euphratica | 4 | populus_peu05276, populus_peu22206, populus_peu35660 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605612, gene-LOC132630304, gene-LOC132643556 |
| Solanaceae | Solanum chilense | 3 | SOLCI002799800, SOLCI002978800, SOLCI005672800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004836, gene-LOC107021093, gene-LOC107031803 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2993_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0514, TC11G2174 |