Basic Information
Locus ID:
gene.Thate06g00030
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 303038 | 391525 | + | gene.Thate06g00030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 85,451.39 Da | 52.22 | 85.53 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 567 | 606 | 4.2E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 294 | 411 | 4.1E-9 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 546 | 607 | 6.95E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 178 | 434 | 1.24E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 694 | 750 | 4.13E-7 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 538 | 609 | 5.2E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 177 | 445 | 1.1E-27 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 543 | 607 | 3.4E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 677 | 742 | 1.0 | IPR014720 |
| SMART | SM00577 | forpap2 | 285 | 418 | 1.5E-10 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 183 | 434 | 16.663937 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 666 | 743 | 8.930842 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 542 | 608 | 11.601236 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 771 | - | - |
| Coils | Coil | Coil | 204 | 224 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_038981055.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Phoenix dactylifera] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B9A356 | protein-serine/threonine phosphatase OS=Phoenix dactylifera OX=42345 GN=LOC103704029 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology